STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KYH34613.1L-beta-lysine 5,6-aminomutase beta subunit. (270 aa)    
Predicted Functional Partners:
KYH34614.1
L-beta-lysine 5,6-aminomutase alpha subunit.
 
  0.999
kamA
L-lysine 2,3-aminomutase.
 
  
 0.980
kdd_1
L-erythro-3,5-diaminohexanoate dehydrogenase.
 
  
  0.980
KYH34616.1
Hypothetical protein.
 
     0.966
mutS_2
DNA mismatch repair protein MutS; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity. Belongs to the DNA mismatch repair MutS family. MutS2 subfamily.
 
     0.946
kdd_2
L-erythro-3,5-diaminohexanoate dehydrogenase.
 
 
 0.943
oraS
D-ornithine 4,5-aminomutase subunit alpha.
 
 
  0.887
kal
3-aminobutyryl-CoA ammonia lyase.
 
     0.865
kce
3-keto-5-aminohexanoate cleavage enzyme.
 
     0.859
deoC2
Deoxyribose-phosphate aldolase 2; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily.
   
  0.842
Your Current Organism:
Clostridium tepidiprofundi
NCBI taxonomy Id: 1121338
Other names: C. tepidiprofundi DSM 19306, Clostridium tepidiprofundi DSM 19306, Clostridium tepidiprofundi SG 508
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.