STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KYH34633.1Tetratricopeptide repeat protein. (399 aa)    
Predicted Functional Partners:
KYH34007.1
Tetratricopeptide repeat protein.
  
 0.998
KYH35822.1
WD domain, G-beta repeat.
  
 0.995
KYH35528.1
Hypothetical protein.
    
 0.991
inlA_1
internalin-A precursor.
  
 0.959
inlA_2
internalin-A precursor.
  
 0.959
inlA_3
internalin-A precursor.
  
 0.959
sunS
SPBc2 prophage-derived glycosyltransferase SunS.
  
 0.951
KYH34452.1
Hypothetical protein.
    
 0.937
rpsC
30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.
    
 0.932
KYH32051.1
Hypothetical protein.
   
 0.930
Your Current Organism:
Clostridium tepidiprofundi
NCBI taxonomy Id: 1121338
Other names: C. tepidiprofundi DSM 19306, Clostridium tepidiprofundi DSM 19306, Clostridium tepidiprofundi SG 508
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.