STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KYH30829.1Hypothetical protein. (322 aa)    
Predicted Functional Partners:
KYH30830.1
Hypothetical protein.
 
    0.960
ybeZ
PhoH-like protein.
       0.696
KYH30831.1
Peptidase family M50.
       0.696
desK
Sensor histidine kinase DesK.
 
    0.563
KYH29447.1
Bacterial regulatory protein, luxR family.
  
    0.506
KYH30836.1
ABC-2 family transporter protein.
 
    0.460
KYH30835.1
ABC-2 family transporter protein.
 
    0.433
trmB
tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
       0.430
Your Current Organism:
Clostridium tepidiprofundi
NCBI taxonomy Id: 1121338
Other names: C. tepidiprofundi DSM 19306, Clostridium tepidiprofundi DSM 19306, Clostridium tepidiprofundi SG 508
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.