STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHO51780.1Helix-turn-helix domain-containing protein. (262 aa)    
Predicted Functional Partners:
SHO51784.1
Two-component system, sensor histidine kinase YesM.
 
 
 0.750
SHO53273.1
PAS domain S-box-containing protein.
   
 0.744
SHO53290.1
Diguanylate cyclase (GGDEF) domain-containing protein.
   
 0.726
SHO49852.1
Flagellar motor switch protein FliM.
  
 0.718
SHO49851.1
Flagellar motor switch protein FliN/FliY.
  
 0.709
SHO51781.1
Raffinose/stachyose/melibiose transport system permease protein.
 
     0.699
SHO49839.1
Two-component system, chemotaxis family, sensor kinase CheA.
  
 0.677
SHO53272.1
Two-component system, chemotaxis family, sensor kinase CheA.
  
 0.677
SHO53736.1
Diguanylate cyclase (GGDEF) domain-containing protein.
   
 0.668
SHO48492.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
   
 0.650
Your Current Organism:
Anaerocolumna xylanovorans
NCBI taxonomy Id: 1121345
Other names: A. xylanovorans DSM 12503, Anaerocolumna xylanovorans DSM 12503, Clostridium xylanovorans DSM 12503
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