STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHO52834.1Type II secretion system protein F (GspF). (284 aa)    
Predicted Functional Partners:
SHO52818.1
AAA domain-containing protein.
 
  
 0.952
SHO52831.1
Type II secretion system protein F (GspF).
 
     0.948
SHO52817.1
Pilus assembly protein CpaF.
 
  
 0.913
SHO53867.1
Pilus assembly protein CpaF.
 
  
 0.879
SHO47031.1
Pilus assembly protein CpaF.
 
  
 0.854
SHO52816.1
FHA domain-containing protein.
 
     0.827
SHO52810.1
Hypothetical protein.
 
  
 0.819
SHO53865.1
Type II secretion system (T2SS), protein F.
 
     0.804
SHO53861.1
TadE-like protein.
 
  
 0.743
SHO52822.1
TadE-like protein.
  
  
 0.722
Your Current Organism:
Anaerocolumna xylanovorans
NCBI taxonomy Id: 1121345
Other names: A. xylanovorans DSM 12503, Anaerocolumna xylanovorans DSM 12503, Clostridium xylanovorans DSM 12503
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.