STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SER86197.1DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain. (218 aa)    
Predicted Functional Partners:
SER86240.1
Hypothetical protein.
  0.977
SER59796.1
Two-component system, OmpR family, sensor histidine kinase MtrB.
 0.964
SES20864.1
Two-component system, OmpR family, sensor histidine kinase SenX3.
 0.928
SES01144.1
Two-component system, OmpR family, sensor histidine kinase MprB.
 0.911
SES30368.1
Two-component system, OmpR family, sensor kinase.
 0.886
SER86280.1
Hypothetical protein.
       0.822
SER42521.1
Signal transduction histidine kinase.
 
  0.809
ribBA
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
     
 0.644
SES05117.1
His Kinase A (phospho-acceptor) domain-containing protein.
 
 
 0.639
SES21164.1
Uroporphyrinogen III methyltransferase / synthase.
     
 0.635
Your Current Organism:
Corynebacterium cystitidis
NCBI taxonomy Id: 1121357
Other names: C. cystitidis DSM 20524, Corynebacterium cystitidis DSM 20524
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