Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CXB45_00215 | CXB45_07610 | GCA_000375365_01580 | GCA_000375365_01472 | Unannotated protein; Belongs to the shikimate dehydrogenase family. | Unannotated protein. | 0.964 |
CXB45_00215 | CXB45_08915 | GCA_000375365_01580 | GCA_000375365_00855 | Unannotated protein; Belongs to the shikimate dehydrogenase family. | Unannotated protein. | 0.895 |
CXB45_00215 | aroA | GCA_000375365_01580 | GCA_000375365_01254 | Unannotated protein; Belongs to the shikimate dehydrogenase family. | Unannotated protein; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.995 |
CXB45_00215 | aroB | GCA_000375365_01580 | GCA_000375365_01584 | Unannotated protein; Belongs to the shikimate dehydrogenase family. | Unannotated protein; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 0.999 |
CXB45_00215 | aroC | GCA_000375365_01580 | GCA_000375365_01582 | Unannotated protein; Belongs to the shikimate dehydrogenase family. | Unannotated protein; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.988 |
CXB45_00215 | aroK | GCA_000375365_01580 | GCA_000375365_01583 | Unannotated protein; Belongs to the shikimate dehydrogenase family. | Unannotated protein; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.998 |
CXB45_00215 | aroQ | GCA_000375365_01580 | GCA_000375365_01585 | Unannotated protein; Belongs to the shikimate dehydrogenase family. | Unannotated protein; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family. | 0.992 |
CXB45_00215 | pabB | GCA_000375365_01580 | GCA_000375365_00745 | Unannotated protein; Belongs to the shikimate dehydrogenase family. | Unannotated protein. | 0.851 |
CXB45_07605 | CXB45_07610 | GCA_000375365_01471 | GCA_000375365_01472 | Unannotated protein. | Unannotated protein. | 0.706 |
CXB45_07605 | CXB45_07615 | GCA_000375365_01471 | GCA_000375365_01473 | Unannotated protein. | Unannotated protein. | 0.706 |
CXB45_07610 | CXB45_00215 | GCA_000375365_01472 | GCA_000375365_01580 | Unannotated protein. | Unannotated protein; Belongs to the shikimate dehydrogenase family. | 0.964 |
CXB45_07610 | CXB45_07605 | GCA_000375365_01472 | GCA_000375365_01471 | Unannotated protein. | Unannotated protein. | 0.706 |
CXB45_07610 | CXB45_07615 | GCA_000375365_01472 | GCA_000375365_01473 | Unannotated protein. | Unannotated protein. | 0.859 |
CXB45_07610 | CXB45_08915 | GCA_000375365_01472 | GCA_000375365_00855 | Unannotated protein. | Unannotated protein. | 0.844 |
CXB45_07610 | aroA | GCA_000375365_01472 | GCA_000375365_01254 | Unannotated protein. | Unannotated protein; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.766 |
CXB45_07610 | aroB | GCA_000375365_01472 | GCA_000375365_01584 | Unannotated protein. | Unannotated protein; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 0.891 |
CXB45_07610 | aroC | GCA_000375365_01472 | GCA_000375365_01582 | Unannotated protein. | Unannotated protein; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.885 |
CXB45_07610 | aroK | GCA_000375365_01472 | GCA_000375365_01583 | Unannotated protein. | Unannotated protein; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.978 |
CXB45_07610 | aroQ | GCA_000375365_01472 | GCA_000375365_01585 | Unannotated protein. | Unannotated protein; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family. | 0.959 |
CXB45_07610 | pabB | GCA_000375365_01472 | GCA_000375365_00745 | Unannotated protein. | Unannotated protein. | 0.798 |
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