STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000379725_01071Unannotated protein. (465 aa)    
Predicted Functional Partners:
GCA_000379725_02057
Unannotated protein.
 
 0.999
GCA_000379725_01073
Unannotated protein.
  
  
 0.937
GCA_000379725_03754
Unannotated protein.
 
 
0.891
GCA_000379725_00034
Unannotated protein.
   
  
 0.872
GCA_000379725_03623
Unannotated protein.
   
  
 0.863
GCA_000379725_03624
Unannotated protein.
   
  
 0.855
GCA_000379725_00650
Unannotated protein.
   
  
 0.854
GCA_000379725_01070
Unannotated protein.
       0.790
GCA_000379725_01072
Unannotated protein.
       0.772
GCA_000379725_02419
Unannotated protein.
 
 
 0.745
Your Current Organism:
Cytophaga aurantiaca
NCBI taxonomy Id: 1121373
Other names: C. aurantiaca DSM 3654, Cytophaga aurantiaca DSM 3654
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