STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
selDUnannotated protein; Synthesizes selenophosphate from selenide and ATP. (331 aa)    
Predicted Functional Partners:
selA
Unannotated protein; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.
 
  
 0.994
selB
Unannotated protein.
 
   
 0.933
iscS
Unannotated protein.
    
 0.917
csd
Unannotated protein; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
   
 0.916
trxB
Unannotated protein.
     
 0.913
GCA_000429885_01529
Unannotated protein.
       0.535
GCA_000429885_01531
Unannotated protein; Belongs to the ATP-dependent DNA ligase family.
  
    0.524
fdhA_1
Unannotated protein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
   
 0.510
dnaA
Unannotated protein; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.
      
 0.445
fdhA_2
Unannotated protein.
 
   
 0.414
Your Current Organism:
Dermatophilus congolensis
NCBI taxonomy Id: 1121387
Other names: D. congolensis DSM 44180 = NBRC 105199, Dermatophilus congolensis DSM 44180, Dermatophilus congolensis DSM 44180 = NBRC 105199, Dermatophilus congolensis NBRC 105199, Dermatophilus congolensis NBRC 105199 = DSM 44180
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.