STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC20105.1Tetratricopeptide repeat-containing protein. (498 aa)    
Predicted Functional Partners:
SMC20102.1
Tetratricopeptide repeat-containing protein.
    
 0.876
SMC20098.1
Extracellular protein.
       0.773
SMC20100.1
Hypothetical protein.
       0.773
SMC25791.1
PAS domain S-box-containing protein.
   
 0.756
ribBA
GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.743
SMC20837.1
Tetratricopeptide repeat-containing protein.
  
 
 0.743
SMC21872.1
PAS domain S-box-containing protein.
   
 0.732
SMC22442.1
Glycosyltransferase involved in cell wall bisynthesis.
    
 0.711
SMC22443.1
Glycosyltransferase, GT2 family.
    
 0.711
SMC20097.1
Putative lipoprotein.
       0.662
Your Current Organism:
Desulfacinum hydrothermale
NCBI taxonomy Id: 1121390
Other names: D. hydrothermale DSM 13146, Desulfacinum hydrothermale DSM 13146
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.