STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC20884.1FKBP-type peptidyl-prolyl cis-trans isomerase SlyD. (172 aa)    
Predicted Functional Partners:
rpsB
SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family.
   
   0.847
rpsC
SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.
   
   0.819
SMC24055.1
FKBP-type peptidyl-prolyl cis-trans isomerase SlyD.
  
     0.774
SMC21229.1
Hydrogenase nickel incorporation protein HypB.
    
 
 0.750
SMC25854.1
Peptidylprolyl isomerase.
  
     0.513
rpsJ
SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.
   
    0.510
pyrD
Dihydroorotate oxidase B, catalytic subunit; Catalyzes the conversion of dihydroorotate to orotate.
  
    0.502
SMC20853.1
Dihydroorotate oxidase B, electron transfer subunit.
       0.467
SMC20854.1
Conserved hypothetical protein; Belongs to the multicopper oxidase YfiH/RL5 family.
       0.466
SMC23189.1
Isocitrate dehydrogenase (NADP); Belongs to the isocitrate and isopropylmalate dehydrogenases family.
  
    0.437
Your Current Organism:
Desulfacinum hydrothermale
NCBI taxonomy Id: 1121390
Other names: D. hydrothermale DSM 13146, Desulfacinum hydrothermale DSM 13146
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