STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC21508.1Iron complex outermembrane recepter protein. (684 aa)    
Predicted Functional Partners:
SMC28995.1
Protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
 
 0.938
SMC28104.1
Hypothetical protein.
    
 
 0.937
SMC21507.1
Protein of unknown function.
 
     0.928
SMC21506.1
Signal transduction histidine kinase.
 
   
 0.779
SMC21514.1
Iron complex outermembrane recepter protein.
 
    
0.743
SMC25699.1
Type I secretion outer membrane protein, TolC family.
  
   
 0.640
SMC25983.1
Protein of unknown function.
  
     0.531
SMC23070.1
BON domain-containing protein.
  
     0.482
SMC28648.1
Vitamin B12 transporter.
 
  
0.470
SMC25698.1
RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
   
 0.448
Your Current Organism:
Desulfacinum hydrothermale
NCBI taxonomy Id: 1121390
Other names: D. hydrothermale DSM 13146, Desulfacinum hydrothermale DSM 13146
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