SMC22073.1 protein (Desulfacinum hydrothermale)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SMC22073.1

Regulatory protein, Fis family. (406 aa)

Predicted Functional Partners:

SMC25791.1

0.869

SMC19478.1

0.856

SMC18838.1

0.851

SMC22890.1

0.847

SMC26632.1

0.831

SMC21872.1

0.825

SMC21506.1

0.804

SMC22233.1

0.716

SMC22300.1

0.716

SMC23017.1

0.716

Your Current Organism:

Desulfacinum hydrothermale

NCBI taxonomy Id: 1121390
Other names: D. hydrothermale DSM 13146, Desulfacinum hydrothermale DSM 13146

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SMC18838.1	SMC19478.1	SAMN02746041_00552	SAMN02746041_00689	PAS domain S-box-containing protein.	PAS domain S-box-containing protein.	0.998
SMC18838.1	SMC21506.1	SAMN02746041_00552	SAMN02746041_01194	PAS domain S-box-containing protein.	Signal transduction histidine kinase.	0.998
SMC18838.1	SMC21872.1	SAMN02746041_00552	SAMN02746041_01299	PAS domain S-box-containing protein.	PAS domain S-box-containing protein.	0.999
SMC18838.1	SMC22073.1	SAMN02746041_00552	SAMN02746041_01367	PAS domain S-box-containing protein.	Regulatory protein, Fis family.	0.851
SMC18838.1	SMC22233.1	SAMN02746041_00552	SAMN02746041_01370	PAS domain S-box-containing protein.	PAS domain S-box-containing protein.	0.998
SMC18838.1	SMC22300.1	SAMN02746041_00552	SAMN02746041_01384	PAS domain S-box-containing protein.	PAS domain S-box-containing protein.	0.998
SMC18838.1	SMC22890.1	SAMN02746041_00552	SAMN02746041_01586	PAS domain S-box-containing protein.	PAS domain S-box-containing protein.	0.999
SMC18838.1	SMC23017.1	SAMN02746041_00552	SAMN02746041_01621	PAS domain S-box-containing protein.	PAS domain S-box-containing protein.	0.998
SMC18838.1	SMC25791.1	SAMN02746041_00552	SAMN02746041_02430	PAS domain S-box-containing protein.	PAS domain S-box-containing protein.	0.998
SMC18838.1	SMC26632.1	SAMN02746041_00552	SAMN02746041_02698	PAS domain S-box-containing protein.	RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	0.811
SMC19478.1	SMC18838.1	SAMN02746041_00689	SAMN02746041_00552	PAS domain S-box-containing protein.	PAS domain S-box-containing protein.	0.998
SMC19478.1	SMC21506.1	SAMN02746041_00689	SAMN02746041_01194	PAS domain S-box-containing protein.	Signal transduction histidine kinase.	0.998
SMC19478.1	SMC21872.1	SAMN02746041_00689	SAMN02746041_01299	PAS domain S-box-containing protein.	PAS domain S-box-containing protein.	0.998
SMC19478.1	SMC22073.1	SAMN02746041_00689	SAMN02746041_01367	PAS domain S-box-containing protein.	Regulatory protein, Fis family.	0.856
SMC19478.1	SMC22233.1	SAMN02746041_00689	SAMN02746041_01370	PAS domain S-box-containing protein.	PAS domain S-box-containing protein.	0.998
SMC19478.1	SMC22300.1	SAMN02746041_00689	SAMN02746041_01384	PAS domain S-box-containing protein.	PAS domain S-box-containing protein.	0.998
SMC19478.1	SMC22890.1	SAMN02746041_00689	SAMN02746041_01586	PAS domain S-box-containing protein.	PAS domain S-box-containing protein.	0.998
SMC19478.1	SMC23017.1	SAMN02746041_00689	SAMN02746041_01621	PAS domain S-box-containing protein.	PAS domain S-box-containing protein.	0.998
SMC19478.1	SMC25791.1	SAMN02746041_00689	SAMN02746041_02430	PAS domain S-box-containing protein.	PAS domain S-box-containing protein.	0.998
SMC19478.1	SMC26632.1	SAMN02746041_00689	SAMN02746041_02698	PAS domain S-box-containing protein.	RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	0.821