STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC22804.1Rhodanese-related sulfurtransferase. (285 aa)    
Predicted Functional Partners:
SMC21194.1
Cysteine desulfurase.
  
 0.896
SMC22794.1
Putative ABC transport system ATP-binding protein.
  
   0.835
SMC27144.1
Superoxide dismutase.
  
 
 0.821
SMC17325.1
Coenzyme F420-reducing hydrogenase, delta subunit.
   
  0.813
SMC25924.1
Glyoxylase, beta-lactamase superfamily II.
 
 0.813
ybeY
Probable rRNA maturation factor; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
   
   0.791
SMC22796.1
Cyclic nucleotide-binding domain-containing protein.
  
    0.759
rpsQ
Small subunit ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
   
   0.755
SMC21010.1
Molybdopterin or thiamine biosynthesis adenylyltransferase.
 
  
 0.753
SMC22811.1
Molybdopterin or thiamine biosynthesis adenylyltransferase.
 
  
 0.735
Your Current Organism:
Desulfacinum hydrothermale
NCBI taxonomy Id: 1121390
Other names: D. hydrothermale DSM 13146, Desulfacinum hydrothermale DSM 13146
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