STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC25341.1Two-component system, NtrC family, response regulator HydG. (449 aa)    
Predicted Functional Partners:
SMC25338.1
Signal transduction histidine kinase, nitrogen specific.
 
 
 0.903
SMC22890.1
PAS domain S-box-containing protein.
  
 0.841
SMC18838.1
PAS domain S-box-containing protein.
  
 0.840
SMC19478.1
PAS domain S-box-containing protein.
  
 0.822
SMC26632.1
RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
  
 0.773
SMC21506.1
Signal transduction histidine kinase.
  
 0.764
SMC25791.1
PAS domain S-box-containing protein.
  
 0.741
SMC20815.1
Two-component system, chemotaxis family, sensor kinase CheA.
  
 0.739
SMC21865.1
Chemotaxis signal transduction protein.
  
 0.698
SMC16757.1
PAS domain S-box-containing protein.
  
0.678
Your Current Organism:
Desulfacinum hydrothermale
NCBI taxonomy Id: 1121390
Other names: D. hydrothermale DSM 13146, Desulfacinum hydrothermale DSM 13146
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.