STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK06488.1Protein-S-isoprenylcysteine O-methyltransferase Ste14. (296 aa)    
Predicted Functional Partners:
rpsM
SSU ribosomal protein S13P; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family.
  
    0.578
SHJ39920.1
4Fe-4S binding domain-containing protein.
  
 
  0.576
SHK06528.1
Peptidase propeptide and YPEB domain-containing protein.
       0.574
SHJ09678.1
4Fe-4S binding domain-containing protein.
   
 
  0.545
SHJ61914.1
4Fe-4S binding domain-containing protein.
   
 
  0.545
SHI83873.1
Flavodoxin domain-containing protein.
   
 
  0.521
SHJ30103.1
4Fe-4S binding domain-containing protein.
   
 
  0.521
SHJ51581.1
Hypothetical protein.
   
 
  0.521
SHL01369.1
4Fe-4S dicluster domain-containing protein.
   
 
  0.521
SHL40998.1
4Fe-4S dicluster domain-containing protein.
   
 
  0.521
Your Current Organism:
Desulfatibacillum alkenivorans DSM 16219
NCBI taxonomy Id: 1121393
Other names: D. alkenivorans DSM 16219
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