STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK36672.1Hypothetical protein. (91 aa)    
Predicted Functional Partners:
SHK61059.1
Sugar phosphate isomerase/epimerase.
  
 
 0.939
SHK36753.1
Nucleoside-diphosphate-sugar epimerase.
  
 
 0.869
SHK36870.1
CDP-glucose 4,6-dehydratase.
  
 
 0.847
SHK36829.1
Glucose-1-phosphate cytidylyltransferase.
  
  
 0.841
SHL37765.1
Uncharacterized conserved protein YbjT, contains NAD(P)-binding and DUF2867 domains.
   
 
 0.836
SHK37384.1
UDP-N-acetylglucosamine 2-epimerase/UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing,TIGR03568.
  
 
 0.827
SHK37013.1
Acetyltransferase (isoleucine patch superfamily).
  
 
 0.823
SHK36918.1
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
    
 0.796
SHI50319.1
dTDP-4-amino-4,6-dideoxygalactose transaminase; Belongs to the DegT/DnrJ/EryC1 family.
  
 
 0.795
SHK36713.1
Shikimate dehydrogenase substrate binding domain-containing protein.
     
 0.795
Your Current Organism:
Desulfatibacillum alkenivorans DSM 16219
NCBI taxonomy Id: 1121393
Other names: D. alkenivorans DSM 16219
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.