STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC97764.1DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains. (625 aa)    
Predicted Functional Partners:
SMC97757.1
Signal transduction histidine kinase.
 
 
0.919
SMC85531.1
PAS domain S-box-containing protein.
 
  
 0.817
SMC97587.1
PAS domain S-box-containing protein.
 
  
 0.777
SMC39197.1
Signal transduction histidine kinase.
  
 0.775
SMC97754.1
EamA-like transporter family protein.
       0.773
SMC54329.1
PAS domain S-box-containing protein.
 
  
0.766
SMC78160.1
PAS domain S-box-containing protein.
 
  
 0.757
SMC69401.1
PAS domain S-box-containing protein.
    
 0.734
SMC71191.1
PAS domain S-box-containing protein.
    
 0.734
SMD12380.1
PAS domain S-box-containing protein.
    
 0.734
Your Current Organism:
Desulfobacterium vacuolatum
NCBI taxonomy Id: 1121400
Other names: D. vacuolatum DSM 3385, Desulfobacterium vacuolatum DSM 3385
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