STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH68253.1N-acetylmuramoyl-L-alanine amidase. (645 aa)    
Predicted Functional Partners:
SHH44297.1
Membrane-bound lytic murein transglycosylase D.
 
  
 0.908
SHI14592.1
Membrane associated serine protease, rhomboid family.
  
  0.889
SHH81644.1
Rhomboid family protein.
 
   0.883
SHI09149.1
Rhomboid protease GluP.
  
   0.815
SHH64406.1
Outer membrane lipoprotein-sorting protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
    
   0.807
SHH72088.1
Outer membrane lipoprotein carrier protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
    
   0.807
SHI10632.1
Hypothetical protein.
    
   0.807
SHH71813.1
Membrane-bound lytic murein transglycosylase D.
 
  
 0.731
SHH96330.1
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB.
 
   
 0.683
folE2
GTP cyclohydrolase I; Converts GTP to 7,8-dihydroneopterin triphosphate.
  
  
 0.661
Your Current Organism:
Desulfofustis glycolicus
NCBI taxonomy Id: 1121409
Other names: D. glycolicus DSM 9705, Desulfofustis glycolicus DSM 9705
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