STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHO42685.1TRAP transporter, DctM subunit. (442 aa)    
Predicted Functional Partners:
SHO42684.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
 0.996
SHO42682.1
TRAP-type mannitol/chloroaromatic compound transport system, substrate-binding protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
  
 0.899
SHO49242.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
  
 0.827
SHO48187.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
  
 0.809
SHO48186.1
Tat (twin-arginine translocation) pathway signal sequence; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
  
 0.795
SHO49244.1
TRAP-type mannitol/chloroaromatic compound transport system, substrate-binding protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
  
 0.795
SHO42604.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
  
 0.794
SHO42605.1
TRAP-type mannitol/chloroaromatic compound transport system, substrate-binding protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
  
 0.794
SHO43872.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
     0.721
SHO43772.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
     0.578
Your Current Organism:
Desulfopila aestuarii
NCBI taxonomy Id: 1121416
Other names: D. aestuarii DSM 18488, Desulfopila aestuarii DSM 18488
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