STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHO42802.1Threonine/homoserine/homoserine lactone efflux protein. (202 aa)    
Predicted Functional Partners:
SHO43709.1
Threonine/homoserine/homoserine lactone efflux protein.
  
    0.768
SHO50928.1
Threonine/homoserine/homoserine lactone efflux protein.
  
    0.768
SHO47194.1
Threonine/homoserine/homoserine lactone efflux protein.
  
     0.742
SHO42800.1
AraC-type DNA-binding protein.
 
     0.693
SHO44519.1
Threonine/homoserine/homoserine lactone efflux protein.
  
    0.679
SHO53926.1
LysE type translocator.
  
     0.532
SHO42805.1
CheY chemotaxis protein or a CheY-like REC (receiver) domain.
  
    0.407
Your Current Organism:
Desulfopila aestuarii
NCBI taxonomy Id: 1121416
Other names: D. aestuarii DSM 18488, Desulfopila aestuarii DSM 18488
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.