STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHO42817.1Transcriptional regulator, DeoR family. (285 aa)    
Predicted Functional Partners:
SHO52413.1
6-phosphofructokinase 2; Belongs to the carbohydrate kinase PfkB family.
 
  
 0.958
SHO48297.1
Acetyltransferase.
    
   0.879
SHO51020.1
Ribose 5-phosphate isomerase B.
  
 
 0.780
SHO42816.1
L-fucose isomerase.
 
   
 0.766
SHO49344.1
Transketolase, C-terminal subunit.
    
  0.736
SHO42808.1
Transketolase.
 
  
  0.675
SHO42814.1
Erythritol transport system permease protein.
   
 0.647
SHO52407.1
PTS system, mannitol-specific IIC component.
 
  
 0.643
SHO52409.1
Phosphocarrier protein FPr.
 
  
 0.624
SHO42813.1
Erythritol transport system ATP-binding protein.
 
   
 0.616
Your Current Organism:
Desulfopila aestuarii
NCBI taxonomy Id: 1121416
Other names: D. aestuarii DSM 18488, Desulfopila aestuarii DSM 18488
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.