SHO43509.1 protein (Desulfopila aestuarii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SHO43509.1

Protein-S-isoprenylcysteine O-methyltransferase Ste14. (249 aa)

Predicted Functional Partners:

SHO51395.1

0.883

SHO49391.1

0.706

SHO47917.1

0.699

cysS-2

0.639

SHO46596.1

0.629

SHO46597.1

0.629

SHO49884.1

0.629

SHO53677.1

0.591

SHO52720.1

0.585

SHO48582.1

0.551

Your Current Organism:

Desulfopila aestuarii

NCBI taxonomy Id: 1121416
Other names: D. aestuarii DSM 18488, Desulfopila aestuarii DSM 18488

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SHO43509.1	SHO46596.1	SAMN02745220_00402	SAMN02745220_01555	Protein-S-isoprenylcysteine O-methyltransferase Ste14.	Rhodanese-like domain-containing protein.	0.629
SHO43509.1	SHO46597.1	SAMN02745220_00402	SAMN02745220_01556	Protein-S-isoprenylcysteine O-methyltransferase Ste14.	3-mercaptopyruvate sulfurtransferase SseA, contains two rhodanese domains.	0.629
SHO43509.1	SHO47917.1	SAMN02745220_00402	SAMN02745220_02045	Protein-S-isoprenylcysteine O-methyltransferase Ste14.	Methanogenic corrinoid protein MtbC1.	0.699
SHO43509.1	SHO48582.1	SAMN02745220_00402	SAMN02745220_02383	Protein-S-isoprenylcysteine O-methyltransferase Ste14.	Homocysteine S-methyltransferase.	0.551
SHO43509.1	SHO49391.1	SAMN02745220_00402	SAMN02745220_02834	Protein-S-isoprenylcysteine O-methyltransferase Ste14.	NnrU protein.	0.706
SHO43509.1	SHO49884.1	SAMN02745220_00402	SAMN02745220_03132	Protein-S-isoprenylcysteine O-methyltransferase Ste14.	Thiosulfate/3-mercaptopyruvate sulfurtransferase.	0.629
SHO43509.1	SHO51395.1	SAMN02745220_00402	SAMN02745220_03983	Protein-S-isoprenylcysteine O-methyltransferase Ste14.	Hypothetical protein.	0.883
SHO43509.1	SHO52720.1	SAMN02745220_00402	SAMN02745220_04704	Protein-S-isoprenylcysteine O-methyltransferase Ste14.	Thiosulfate/3-mercaptopyruvate sulfurtransferase.	0.585
SHO43509.1	SHO53677.1	SAMN02745220_00402	SAMN02745220_05253	Protein-S-isoprenylcysteine O-methyltransferase Ste14.	Protein-S-isoprenylcysteine O-methyltransferase Ste14.	0.591
SHO43509.1	cysS-2	SAMN02745220_00402	SAMN02745220_03997	Protein-S-isoprenylcysteine O-methyltransferase Ste14.	cysteinyl-tRNA synthetase.	0.639
SHO46596.1	SHO43509.1	SAMN02745220_01555	SAMN02745220_00402	Rhodanese-like domain-containing protein.	Protein-S-isoprenylcysteine O-methyltransferase Ste14.	0.629
SHO46596.1	SHO46597.1	SAMN02745220_01555	SAMN02745220_01556	Rhodanese-like domain-containing protein.	3-mercaptopyruvate sulfurtransferase SseA, contains two rhodanese domains.	0.976
SHO46596.1	SHO47917.1	SAMN02745220_01555	SAMN02745220_02045	Rhodanese-like domain-containing protein.	Methanogenic corrinoid protein MtbC1.	0.845
SHO46596.1	SHO49391.1	SAMN02745220_01555	SAMN02745220_02834	Rhodanese-like domain-containing protein.	NnrU protein.	0.629
SHO46596.1	SHO49884.1	SAMN02745220_01555	SAMN02745220_03132	Rhodanese-like domain-containing protein.	Thiosulfate/3-mercaptopyruvate sulfurtransferase.	0.628
SHO46596.1	SHO53677.1	SAMN02745220_01555	SAMN02745220_05253	Rhodanese-like domain-containing protein.	Protein-S-isoprenylcysteine O-methyltransferase Ste14.	0.629
SHO46596.1	cysS-2	SAMN02745220_01555	SAMN02745220_03997	Rhodanese-like domain-containing protein.	cysteinyl-tRNA synthetase.	0.790
SHO46597.1	SHO43509.1	SAMN02745220_01556	SAMN02745220_00402	3-mercaptopyruvate sulfurtransferase SseA, contains two rhodanese domains.	Protein-S-isoprenylcysteine O-methyltransferase Ste14.	0.629
SHO46597.1	SHO46596.1	SAMN02745220_01556	SAMN02745220_01555	3-mercaptopyruvate sulfurtransferase SseA, contains two rhodanese domains.	Rhodanese-like domain-containing protein.	0.976
SHO46597.1	SHO47917.1	SAMN02745220_01556	SAMN02745220_02045	3-mercaptopyruvate sulfurtransferase SseA, contains two rhodanese domains.	Methanogenic corrinoid protein MtbC1.	0.845