STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHO43543.1ABC-2 type transport system ATP-binding protein. (606 aa)    
Predicted Functional Partners:
SHO43550.1
ABC-2 type transport system permease protein.
 
 0.997
SHO43551.1
ABC-2 type transport system permease protein.
 
 0.997
SHO43133.1
ABC-2 type transport system permease protein.
  
 0.983
SHO43541.1
HlyD family secretion protein.
  
 0.966
SHO43537.1
Efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family.
 
   
 0.810
SHO50404.1
ABC-type multidrug transport system, ATPase and permease component.
  
0.809
SHO43535.1
Transcriptional regulator, TetR family.
 
   
 0.804
msbA
ATP-binding cassette, subfamily B, MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.
  
0.785
SHO51709.1
ATP-binding cassette, subfamily B.
 
0.785
SHO51710.1
ATP-binding cassette, subfamily B.
 
0.785
Your Current Organism:
Desulfopila aestuarii
NCBI taxonomy Id: 1121416
Other names: D. aestuarii DSM 18488, Desulfopila aestuarii DSM 18488
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