STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHO43972.1TRAP-type C4-dicarboxylate transport system, small permease component. (172 aa)    
Predicted Functional Partners:
SHO43975.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
 
  0.993
SHO43974.1
TRAP transporter, DctM subunit.
 
  0.967
SHO43965.1
2Fe-2S iron-sulfur cluster binding domain-containing protein.
 
     0.895
SHO43963.1
Glycine/D-amino acid oxidase.
 
     0.894
SHO43968.1
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase.
 
     0.881
SHO43969.1
Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family.
 
     0.780
SHO51652.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
  
    0.731
SHO51654.1
TRAP transporter, DctM subunit.
 
  0.728
SHO51653.1
TRAP-type C4-dicarboxylate transport system, small permease component.
  
     0.588
SHO53562.1
Tripartite ATP-independent transporter solute receptor, DctP family.
  
    0.475
Your Current Organism:
Desulfopila aestuarii
NCBI taxonomy Id: 1121416
Other names: D. aestuarii DSM 18488, Desulfopila aestuarii DSM 18488
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