STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHO44209.1Stage II sporulation protein E (SpoIIE). (270 aa)    
Predicted Functional Partners:
SHO49648.1
PAS domain S-box-containing protein.
 
 0.975
SHO47274.1
CheY chemotaxis protein or a CheY-like REC (receiver) domain.
 
 0.973
SHO44553.1
Response regulator receiver domain-containing protein.
  
 0.965
SHO43779.1
PAS domain S-box-containing protein.
 
  0.963
SHO50406.1
Serine/threonine-protein kinase RsbW.
 
 0.959
SHO46438.1
PAS domain S-box-containing protein.
  
 0.958
SHO50407.1
Anti-sigma B factor antagonist; Belongs to the anti-sigma-factor antagonist family.
 
 0.957
SHO42805.1
CheY chemotaxis protein or a CheY-like REC (receiver) domain.
  
 0.954
SHO46256.1
PAS domain S-box-containing protein.
 
 0.953
SHO49785.1
PAS domain S-box-containing protein.
 
 0.953
Your Current Organism:
Desulfopila aestuarii
NCBI taxonomy Id: 1121416
Other names: D. aestuarii DSM 18488, Desulfopila aestuarii DSM 18488
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