Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SHO42562.1 | SHO44516.1 | SAMN02745220_00022 | SAMN02745220_00777 | O-acetyl-ADP-ribose deacetylase (regulator of RNase III), contains Macro domain. | Recombination protein MgsA. | 0.904 |
| SHO42978.1 | SHO44516.1 | SAMN02745220_00238 | SAMN02745220_00777 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | Recombination protein MgsA. | 0.710 |
| SHO42978.1 | SHO45043.1 | SAMN02745220_00238 | SAMN02745220_00976 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family. | 0.582 |
| SHO42978.1 | SHO51526.1 | SAMN02745220_00238 | SAMN02745220_04047 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | ATP-dependent DNA helicase RecQ. | 0.960 |
| SHO42978.1 | SHO51690.1 | SAMN02745220_00238 | SAMN02745220_04163 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | UvrD-like helicase C-terminal domain-containing protein. | 0.992 |
| SHO42978.1 | dnaX | SAMN02745220_00238 | SAMN02745220_04951 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | DNA polymerase III, tau subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.993 |
| SHO42978.1 | polA | SAMN02745220_00238 | SAMN02745220_00993 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.999 |
| SHO44513.1 | SHO44516.1 | SAMN02745220_00776 | SAMN02745220_00777 | Hypothetical protein. | Recombination protein MgsA. | 0.773 |
| SHO44516.1 | SHO42562.1 | SAMN02745220_00777 | SAMN02745220_00022 | Recombination protein MgsA. | O-acetyl-ADP-ribose deacetylase (regulator of RNase III), contains Macro domain. | 0.904 |
| SHO44516.1 | SHO42978.1 | SAMN02745220_00777 | SAMN02745220_00238 | Recombination protein MgsA. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.710 |
| SHO44516.1 | SHO44513.1 | SAMN02745220_00777 | SAMN02745220_00776 | Recombination protein MgsA. | Hypothetical protein. | 0.773 |
| SHO44516.1 | SHO45043.1 | SAMN02745220_00777 | SAMN02745220_00976 | Recombination protein MgsA. | DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family. | 0.650 |
| SHO44516.1 | SHO50208.1 | SAMN02745220_00777 | SAMN02745220_03310 | Recombination protein MgsA. | Competence/damage-inducible protein cinA; Belongs to the CinA family. | 0.495 |
| SHO44516.1 | SHO51526.1 | SAMN02745220_00777 | SAMN02745220_04047 | Recombination protein MgsA. | ATP-dependent DNA helicase RecQ. | 0.823 |
| SHO44516.1 | SHO51690.1 | SAMN02745220_00777 | SAMN02745220_04163 | Recombination protein MgsA. | UvrD-like helicase C-terminal domain-containing protein. | 0.846 |
| SHO44516.1 | dnaX | SAMN02745220_00777 | SAMN02745220_04951 | Recombination protein MgsA. | DNA polymerase III, tau subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.498 |
| SHO44516.1 | nadE | SAMN02745220_00777 | SAMN02745220_03285 | Recombination protein MgsA. | NH(3)-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source. | 0.665 |
| SHO44516.1 | polA | SAMN02745220_00777 | SAMN02745220_00993 | Recombination protein MgsA. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.682 |
| SHO45043.1 | SHO42978.1 | SAMN02745220_00976 | SAMN02745220_00238 | DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.582 |
| SHO45043.1 | SHO44516.1 | SAMN02745220_00976 | SAMN02745220_00777 | DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family. | Recombination protein MgsA. | 0.650 |
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