STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHO45921.1L-lysine 2,3-aminomutase. (352 aa)    
Predicted Functional Partners:
SHO50246.1
Diaminopimelate decarboxylase.
     
 0.800
SHO46143.1
lysyl-tRNA synthetase, class 2.
 
  
 0.770
SHO48107.1
L-lysine 2,3-aminomutase.
  
  
 
0.769
SHO53059.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
   
   0.684
SHO49818.1
CheB methylesterase.
   
   0.669
SHO44394.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
   
   0.667
SHO43451.1
MCP methyltransferase, CheR-type; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP.
    
   0.658
SHO47739.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
    
   0.658
SHO50688.1
Chemotaxis protein methyltransferase CheR.
    
   0.658
SHO53507.1
PAS domain-containing protein; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
    
   0.658
Your Current Organism:
Desulfopila aestuarii
NCBI taxonomy Id: 1121416
Other names: D. aestuarii DSM 18488, Desulfopila aestuarii DSM 18488
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