STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHO46689.1Ni-dependent carbon monoxide dehydrogenase precursor. (629 aa)    
Predicted Functional Partners:
SHO49564.1
acetyl-CoA decarbonylase/synthase beta subunit.
 
 0.997
SHO49567.1
acetyl-CoA decarbonylase/synthase delta subunit.
  
 0.940
SHO49562.1
CO-methylating acetyl-CoA synthase corrinoid iron-sulfur protein large subunit precursor.
 
  
 0.935
SHO46630.1
Formate dehydrogenase major subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 0.891
SHO44394.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
 0.876
SHO53705.1
Formylmethanofuran dehydrogenase subunit E.
  
  
  0.847
SHO44823.1
Formylmethanofuran dehydrogenase subunit E.
  
  
  0.845
SHO49555.1
CO dehydrogenase maturation factor.
 
   
 0.819
SHO52667.1
CO dehydrogenase maturation factor.
 
   
 0.813
SHO49539.1
CO dehydrogenase maturation factor.
 
   
 0.812
Your Current Organism:
Desulfopila aestuarii
NCBI taxonomy Id: 1121416
Other names: D. aestuarii DSM 18488, Desulfopila aestuarii DSM 18488
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