STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHO47309.1Nicotinamidase-related amidase. (186 aa)    
Predicted Functional Partners:
SHO51843.1
LPS sulfotransferase NodH.
  
 0.819
SHO46404.1
Nicotinamidase/pyrazinamidase.
  
  
 0.728
SHO49254.1
5-oxoprolinase (ATP-hydrolysing).
    
  0.688
SHO46406.1
Nicotinate phosphoribosyltransferase; Catalyzes the first step in the biosynthesis of NAD from nicotinic acid, the ATP-dependent synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate. Belongs to the NAPRTase family.
  
 
 0.661
SHO44092.1
Pimeloyl-ACP methyl ester carboxylesterase.
  
 0.647
SHO51087.1
Pimeloyl-ACP methyl ester carboxylesterase.
  
 0.647
SHO48112.1
2-iminobutanoate/2-iminopropanoate deaminase.
  
 
 0.620
SHO51583.1
Endoribonuclease L-PSP.
  
 
 0.620
gatA
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln).
    
  0.619
SHO50398.1
Phenazine biosynthesis protein phzE.
    
 0.619
Your Current Organism:
Desulfopila aestuarii
NCBI taxonomy Id: 1121416
Other names: D. aestuarii DSM 18488, Desulfopila aestuarii DSM 18488
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