STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHO47974.1Hypothetical protein. (741 aa)    
Predicted Functional Partners:
SHO51350.1
Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain.
  
     0.565
SHO51364.1
Hypothetical protein.
  
     0.559
SHO51346.1
Von Willebrand factor type A domain-containing protein.
  
     0.549
SHO52098.1
Hypothetical protein.
  
     0.546
SHO52105.1
Sulfatase-modifying factor enzyme 1.
  
     0.540
SHO51349.1
Putative ABC transport system permease protein.
  
     0.529
SHO52101.1
Putative ABC transport system permease protein.
  
     0.498
Your Current Organism:
Desulfopila aestuarii
NCBI taxonomy Id: 1121416
Other names: D. aestuarii DSM 18488, Desulfopila aestuarii DSM 18488
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.