STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHO49813.1Polar amino acid transport system substrate-binding protein. (243 aa)    
Predicted Functional Partners:
SHO53251.1
Polar amino acid transport system substrate-binding protein.
  
     0.773
SHO53617.1
Amino acid ABC transporter substrate-binding protein, PAAT family.
  
     0.766
SHO52630.1
Polar amino acid transport system substrate-binding protein.
  
     0.751
SHO49785.1
PAS domain S-box-containing protein.
 
  
 0.742
SHO52364.1
Conserved hypothetical protein.
  
     0.733
SHO49023.1
Hypothetical protein.
  
     0.692
SHO49818.1
CheB methylesterase.
   
 0.675
SHO52912.1
PAS domain S-box-containing protein.
   
 0.668
SHO45327.1
Prephenate dehydratase.
    
 0.653
SHO46256.1
PAS domain S-box-containing protein.
   
 0.653
Your Current Organism:
Desulfopila aestuarii
NCBI taxonomy Id: 1121416
Other names: D. aestuarii DSM 18488, Desulfopila aestuarii DSM 18488
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.