STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHO49956.1Phage shock protein A (PspA) family protein. (221 aa)    
Predicted Functional Partners:
SHO49959.1
Phage shock protein C (PspC) family protein.
 
 
 0.999
SHO51615.1
Hypothetical protein.
  
 
 
 0.948
SHO53554.1
ABC-type uncharacterized transport system, substrate-binding protein.
  
 
 
 0.948
SHO52912.1
PAS domain S-box-containing protein.
   
 
 0.944
SHO42805.1
CheY chemotaxis protein or a CheY-like REC (receiver) domain.
    
 
 0.943
SHO42947.1
Hpt domain-containing protein.
    
 
 0.943
SHO46438.1
PAS domain S-box-containing protein.
    
 
 0.943
SHO49648.1
PAS domain S-box-containing protein.
    
 
 0.943
SHO42692.1
Signal transduction histidine kinase.
    
 
 0.941
SHO46256.1
PAS domain S-box-containing protein.
    
 
 0.941
Your Current Organism:
Desulfopila aestuarii
NCBI taxonomy Id: 1121416
Other names: D. aestuarii DSM 18488, Desulfopila aestuarii DSM 18488
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