SHO50577.1 protein (Desulfopila aestuarii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SHO50577.1

Nitrite and sulphite reductase 4Fe-4S domain-containing protein. (237 aa)

Predicted Functional Partners:

SHO45611.1

0.993

SHO42753.1

0.976

SHO49861.1

0.976

SHO50214.1

0.976

SHO51335.1

0.948

hcp

0.925

SHO44407.1

0.916

SHO46630.1

0.907

SHO46234.1

0.866

SHO43968.1

0.822

Your Current Organism:

Desulfopila aestuarii

NCBI taxonomy Id: 1121416
Other names: D. aestuarii DSM 18488, Desulfopila aestuarii DSM 18488

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SHO42753.1	SHO46630.1	SAMN02745220_00135	SAMN02745220_01572	Rubredoxin; Belongs to the rubredoxin family.	Formate dehydrogenase major subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	0.402
SHO42753.1	SHO50577.1	SAMN02745220_00135	SAMN02745220_03540	Rubredoxin; Belongs to the rubredoxin family.	Nitrite and sulphite reductase 4Fe-4S domain-containing protein.	0.976
SHO43968.1	SHO44407.1	SAMN02745220_00588	SAMN02745220_00734	NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase.	NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase.	0.803
SHO43968.1	SHO45611.1	SAMN02745220_00588	SAMN02745220_01150	NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase.	Assimilatory nitrite reductase (NAD(P)H) small subunit.	0.872
SHO43968.1	SHO46234.1	SAMN02745220_00588	SAMN02745220_01380	NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase.	NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase.	0.803
SHO43968.1	SHO46630.1	SAMN02745220_00588	SAMN02745220_01572	NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase.	Formate dehydrogenase major subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	0.996
SHO43968.1	SHO50577.1	SAMN02745220_00588	SAMN02745220_03540	NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase.	Nitrite and sulphite reductase 4Fe-4S domain-containing protein.	0.822
SHO43968.1	SHO51335.1	SAMN02745220_00588	SAMN02745220_03963	NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase.	NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase.	0.803
SHO44407.1	SHO43968.1	SAMN02745220_00734	SAMN02745220_00588	NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase.	NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase.	0.803
SHO44407.1	SHO45611.1	SAMN02745220_00734	SAMN02745220_01150	NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase.	Assimilatory nitrite reductase (NAD(P)H) small subunit.	0.956
SHO44407.1	SHO46234.1	SAMN02745220_00734	SAMN02745220_01380	NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase.	NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase.	0.646
SHO44407.1	SHO46630.1	SAMN02745220_00734	SAMN02745220_01572	NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase.	Formate dehydrogenase major subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	0.996
SHO44407.1	SHO50577.1	SAMN02745220_00734	SAMN02745220_03540	NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase.	Nitrite and sulphite reductase 4Fe-4S domain-containing protein.	0.916
SHO44407.1	SHO51335.1	SAMN02745220_00734	SAMN02745220_03963	NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase.	NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase.	0.674
SHO44407.1	hcp	SAMN02745220_00734	SAMN02745220_03539	NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase.	Hydroxylamine reductase; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O.	0.749
SHO45611.1	SHO43968.1	SAMN02745220_01150	SAMN02745220_00588	Assimilatory nitrite reductase (NAD(P)H) small subunit.	NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase.	0.872
SHO45611.1	SHO44407.1	SAMN02745220_01150	SAMN02745220_00734	Assimilatory nitrite reductase (NAD(P)H) small subunit.	NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase.	0.956
SHO45611.1	SHO46234.1	SAMN02745220_01150	SAMN02745220_01380	Assimilatory nitrite reductase (NAD(P)H) small subunit.	NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase.	0.956
SHO45611.1	SHO46630.1	SAMN02745220_01150	SAMN02745220_01572	Assimilatory nitrite reductase (NAD(P)H) small subunit.	Formate dehydrogenase major subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	0.960
SHO45611.1	SHO50577.1	SAMN02745220_01150	SAMN02745220_03540	Assimilatory nitrite reductase (NAD(P)H) small subunit.	Nitrite and sulphite reductase 4Fe-4S domain-containing protein.	0.993