STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHO51121.1Spermidine/putrescine transport system substrate-binding protein; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family. (350 aa)    
Predicted Functional Partners:
SHO51119.1
Spermidine/putrescine transport system permease protein.
 
 0.997
SHO49755.1
Spermidine/putrescine transport system permease protein.
 
 0.994
SHO51118.1
Spermidine/putrescine transport system permease protein.
 
 0.979
SHO53218.1
Spermidine/putrescine transport system permease protein.
 
 0.974
SHO49756.1
Spermidine/putrescine transport system permease protein.
 
 0.959
SHO43646.1
Spermidine/putrescine transport system permease protein.
 
 0.956
SHO53217.1
Spermidine/putrescine transport system permease protein.
 
 0.956
SHO53219.1
Spermidine/putrescine transport system permease protein.
 
 
 0.949
SHO43649.1
Spermidine/putrescine transport system permease protein.
 
 0.948
potA
Spermidine/putrescine transport system ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
 
 0.930
Your Current Organism:
Desulfopila aestuarii
NCBI taxonomy Id: 1121416
Other names: D. aestuarii DSM 18488, Desulfopila aestuarii DSM 18488
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.