STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHO52538.1Basic amino acid/polyamine antiporter, APA family. (425 aa)    
Predicted Functional Partners:
SHO42870.1
PhoP regulatory network protein YrbL.
    
 0.859
SHO48426.1
Hypothetical protein.
    
 0.859
nadE
NH(3)-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
    
 0.766
SHO45443.1
Chorismate mutase /prephenate dehydratase.
   
 0.702
SHO49648.1
PAS domain S-box-containing protein.
  
 
 0.659
aroE
Shikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).
  
 0.655
SHO53496.1
Signal transduction histidine kinase.
  
 
 0.638
SHO48591.1
Sulfinoalanine decarboxylase.
  
 
 0.631
SHO42692.1
Signal transduction histidine kinase.
  
 
 0.619
SHO46256.1
PAS domain S-box-containing protein.
  
 
 0.619
Your Current Organism:
Desulfopila aestuarii
NCBI taxonomy Id: 1121416
Other names: D. aestuarii DSM 18488, Desulfopila aestuarii DSM 18488
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.