STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHO53102.1Transcriptional regulator, XRE family with cupin sensor. (180 aa)    
Predicted Functional Partners:
SHO50208.1
Competence/damage-inducible protein cinA; Belongs to the CinA family.
    
 0.753
SHO52086.1
Serine/threonine-protein kinase HipA.
  
 
 0.687
SHO52271.1
Hypothetical protein.
  
 
 0.687
nadE
NH(3)-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
    
 0.652
argA
N-acetylglutamate synthase; Belongs to the acetyltransferase family. ArgA subfamily.
  
 
  0.618
SHO49581.1
Protein of unknown function.
    
 0.581
SHO44394.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
  0.535
murB
UDP-N-acetylmuramate dehydrogenase; Cell wall formation.
    
 0.419
SHO53103.1
acetyl-CoA C-acetyltransferase.
       0.419
SHO53100.1
Transposase.
       0.416
Your Current Organism:
Desulfopila aestuarii
NCBI taxonomy Id: 1121416
Other names: D. aestuarii DSM 18488, Desulfopila aestuarii DSM 18488
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.