STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHO53134.1Predicted permease. (67 aa)    
Predicted Functional Partners:
SHO53133.1
Hypothetical protein.
 
     0.939
SHO53135.1
Transcriptional regulator, ArsR family.
  
  
 0.704
SHO48238.1
Putative NADH-flavin reductase.
   
    0.682
SHO50282.1
CO dehydrogenase/acetyl-CoA synthase delta subunit.
  
     0.472
SHO47326.1
Bilirubin oxidase.
  
  
 0.470
SHO52801.1
Copper-resistance protein, CopA family.
  
  
 0.470
rsmI
16S rRNA (cytidine1402-2'-O)-methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
       0.456
SHO45485.1
Chaperone TorD involved in molybdoenzyme TorA maturation.
  
     0.449
SHO45831.1
Haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E.
  
     0.449
SHO51737.1
Phage integrase family protein; Belongs to the 'phage' integrase family.
  
     0.444
Your Current Organism:
Desulfopila aestuarii
NCBI taxonomy Id: 1121416
Other names: D. aestuarii DSM 18488, Desulfopila aestuarii DSM 18488
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.