STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHO53735.1Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB. (831 aa)    
Predicted Functional Partners:
SHO50885.1
General secretion pathway protein F.
 
 0.971
SHO51013.1
Type IV pilus assembly protein PilC.
 
 0.971
SHO49818.1
CheB methylesterase.
   
 0.906
SHO46256.1
PAS domain S-box-containing protein.
  
 0.889
SHO49700.1
Type 4 prepilin peptidase 1 Aspartic peptidase. MEROPS family A24A; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
 
 0.889
SHO51322.1
Signal transduction histidine kinase.
  
 0.889
SHO50886.1
Type II secretion system protein G (GspG).
 
 0.869
SHO42692.1
Signal transduction histidine kinase.
  
 0.859
SHO47804.1
PAS domain S-box-containing protein.
  
 0.859
SHO49785.1
PAS domain S-box-containing protein.
  
 0.859
Your Current Organism:
Desulfopila aestuarii
NCBI taxonomy Id: 1121416
Other names: D. aestuarii DSM 18488, Desulfopila aestuarii DSM 18488
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