STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dsat_0127PFAM: Domain of unknown function DUF4340; KEGG: mgm:Mmc1_0374 hypothetical protein. (332 aa)    
Predicted Functional Partners:
dsat_0128
PFAM: ABC-type uncharacterized transport system; KEGG: mgm:Mmc1_0375 ABC transporter inner membrane protein.
 
     0.957
dsat_0129
PFAM: ABC-type uncharacterized transport system; KEGG: nhl:Nhal_1154 ABC transporter inner membrane protein.
 
     0.957
dsat_0130
KEGG: mgm:Mmc1_0376 ABC transporter; PFAM: ABC transporter related protein; SMART: AAA ATPase.
 
     0.953
dsat_1312
KEGG: gur:Gura_1636 peptidase M1, membrane alanine aminopeptidase.
  
     0.437
dsat_1837
KEGG: dds:Ddes_2028 hypothetical protein.
  
     0.422
Your Current Organism:
Desulfovibrio alkalitolerans
NCBI taxonomy Id: 1121439
Other names: D. alkalitolerans DSM 16529, Desulfovibrio alkalitolerans DSM 16529
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.