STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dsat_0158PFAM: PAAR repeat-containing protein; KEGG: dly:Dehly_1645 PaaR repeat-containing protein. (87 aa)    
Predicted Functional Partners:
dsat_0156
PFAM: baseplate assembly protein V; KEGG: sfu:Sfum_3825 hypothetical protein.
 
   
 0.957
dsat_0160
KEGG: das:Daes_1636 hypothetical protein.
 
     0.949
dsat_0153
KEGG: dly:Dehly_1650 phage protein D-like protein.
 
    0.947
dsat_0155
PFAM: protein of unknown function DUF1353; KEGG: dbr:Deba_1792 hypothetical protein.
 
     0.946
dsat_0162
PFAM: GPW/gp25 family protein; KEGG: dde:Dde_1875 Phage baseplate assembly protein W-like.
 
    0.942
dsat_0154
PFAM: Peptidase M15A; KEGG: dde:Dde_1882 hypothetical protein.
 
     0.922
dsat_0163
PFAM: Baseplate J family protein; KEGG: das:Daes_1639 baseplate J family protein.
 
     0.894
dsat_0149
KEGG: sfu:Sfum_3818 TP901 family phage tail tape measure protein; TIGRFAM: phage tail tape measure protein, TP901 family; PFAM: tail tape measure protein TP901 core region-containing protein.
 
     0.881
dsat_0157
KEGG: dly:Dehly_1646 hypothetical protein.
       0.803
dsat_0159
KEGG: das:Daes_1635 hypothetical protein.
       0.788
Your Current Organism:
Desulfovibrio alkalitolerans
NCBI taxonomy Id: 1121439
Other names: D. alkalitolerans DSM 16529, Desulfovibrio alkalitolerans DSM 16529
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