STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dsat_0246PFAM: glutamine cyclotransferase; KEGG: dmr:Deima_2384 glutamine cyclotransferase. (295 aa)    
Predicted Functional Partners:
dsat_0247
KEGG: dsa:Desal_0791 hypothetical protein.
       0.773
dsat_0516
PFAM: FAD linked oxidase domain protein, FAD linked oxidase domain-containing protein; KEGG: dma:DMR_07470 FAD linked oxidase.
    
   0.616
dsat_1860
PFAM: FAD linked oxidase domain-containing protein, protein of unknown function DUF224 cysteine-rich region domain protein, 4Fe-4S ferredoxin, iron-sulpur binding domain-containing protein, FAD linked oxidase domain protein; KEGG: drt:Dret_1131 FAD linked oxidase domain-containing protein.
    
   0.616
dsat_2103
PFAM: FAD linked oxidase domain protein, FAD linked oxidase domain-containing protein; KEGG: das:Daes_1070 FAD linked oxidase domain-containing protein.
    
   0.616
dsat_0248
Hypothetical protein; KEGG: mem:Memar_1718 NHL repeat-containing protein.
       0.605
dsat_0244
KEGG: dde:Dde_0656 iron-sulfur cluster-binding protein.
       0.554
dsat_0245
PFAM: 4Fe-4S ferredoxin, iron-sulpur binding domain-containing protein, 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; KEGG: dvl:Dvul_0243 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.
       0.554
Your Current Organism:
Desulfovibrio alkalitolerans
NCBI taxonomy Id: 1121439
Other names: D. alkalitolerans DSM 16529, Desulfovibrio alkalitolerans DSM 16529
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