STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dsat_0402PFAM: Radical SAM domain protein; KEGG: dba:Dbac_0047 Radical SAM domain-containing protein. (423 aa)    
Predicted Functional Partners:
ribBA
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.690
dsat_0072
PFAM: Adenylate cyclase class-I, N-terminal domain, adenylate cyclase class-I; KEGG: das:Daes_2670 adenylate cyclase.
   
 
  0.650
dsat_1428
PFAM: Adenylate cyclase class-I, N-terminal domain, adenylate cyclase class-I; KEGG: das:Daes_2670 adenylate cyclase.
   
 
  0.650
mqnB
Futalosine nucleosidase; Catalyzes the hydrolysis of futalosine (FL) to dehypoxanthine futalosine (DHFL) and hypoxanthine, a step in the biosynthesis of menaquinone (MK, vitamin K2).
 
     0.504
dsat_0403
PFAM: type IV pilus assembly PilZ; KEGG: dde:Dde_1667 TPR repeat-containing protein.
       0.493
dsat_2287
Fe-S cluster assembly protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
  
  
 0.441
dsat_2215
PFAM: exonuclease RdgC; KEGG: dvm:DvMF_0918 hypothetical protein.
  
     0.438
dsat_2446
KEGG: dde:Dde_2592 hypothetical protein.
  
     0.403
Your Current Organism:
Desulfovibrio alkalitolerans
NCBI taxonomy Id: 1121439
Other names: D. alkalitolerans DSM 16529, Desulfovibrio alkalitolerans DSM 16529
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.