STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rplS50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. (115 aa)    
Predicted Functional Partners:
rpsP
TIGRFAM: ribosomal protein S16; HAMAP : 30S ribosomal protein S16; KEGG: dma:DMR_34700 30S ribosomal protein S16; PFAM: ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
 
 
 0.999
rplT
50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
 
 
 0.997
rpmA
TIGRFAM: ribosomal protein L27; HAMAP : 50S ribosomal protein L27; KEGG: dma:DMR_39710 50S ribosomal protein L27; PFAM: ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
 
 
 0.997
rplU
50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
 
 
 0.997
rplQ
TIGRFAM: ribosomal protein L17; HAMAP : 50S ribosomal protein L17; KEGG: dde:Dde_2230 50S ribosomal protein L17; PFAM: ribosomal protein L17.
 
 
 0.997
rplA
Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.
 
 
 0.997
rpsI
KEGG: dsa:Desal_3124 30S ribosomal protein S9; HAMAP : Ribosomal protein S9, bacterial/plastid; PFAM: ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
  
 
 0.996
rplM
Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
  
 
 0.996
rpmF
TIGRFAM: ribosomal protein L32; HAMAP : 50S ribosomal protein L32; KEGG: das:Daes_2799 50S ribosomal protein L32; PFAM: ribosomal L32p protein; Belongs to the bacterial ribosomal protein bL32 family.
  
 
 0.996
rpmB
TIGRFAM: ribosomal protein L28; HAMAP : 50S ribosomal protein L28; KEGG: dvl:Dvul_1846 50S ribosomal protein L28; PFAM: ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
 
 0.996
Your Current Organism:
Desulfovibrio alkalitolerans
NCBI taxonomy Id: 1121439
Other names: D. alkalitolerans DSM 16529, Desulfovibrio alkalitolerans DSM 16529
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