STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dsat_0515PFAM: Rubrerythrin; KEGG: pca:Pcar_0084 rubrerythrin. (164 aa)    
Predicted Functional Partners:
dsat_0787
PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen, Peroxiredoxin; KEGG: dsa:Desal_0033 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen.
  
  
 0.776
fur-2
PFAM: ferric-uptake regulator; KEGG: dma:DMR_04370 Fur family transcriptional regulator; Belongs to the Fur family.
  
  
 0.729
dsat_0753
SMART: double-stranded RNA-specific adenosine deaminase (DRADA); KEGG: dvl:Dvul_2942 hypothetical protein.
   
    0.704
dsat_2265
KEGG: das:Daes_0722 hypothetical protein.
   
    0.704
dsat_2472
PFAM: Rubrerythrin; KEGG: dvl:Dvul_0285 rubrerythrin.
  
  
0.676
dsat_1294
KEGG: gem:GM21_0478 glutamate dehydrogenase (NAD(P)(+)); PFAM: Glu/Leu/Phe/Val dehydrogenase, Glu/Leu/Phe/Val dehydrogenase dimerization region; SMART: Glu/Leu/Phe/Val dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
     
 0.591
dsat_2074
PFAM: Rubredoxin domain; KEGG: cyj:Cyan7822_3605 rubredoxin-type Fe(Cys)4 protein.
  
  
 0.591
hcp
Hydroxylamine reductase; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O.
     
 0.548
smpB
SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...]
     
 0.506
dsat_0512
KEGG: dvm:DvMF_2878 phosphotransferase system, phosphocarrier protein HPr; TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr.
       0.504
Your Current Organism:
Desulfovibrio alkalitolerans
NCBI taxonomy Id: 1121439
Other names: D. alkalitolerans DSM 16529, Desulfovibrio alkalitolerans DSM 16529
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