STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dsat_0747PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: chy:CHY_2406 putative reductase, iron-sulfur cluster-binding subunit. (163 aa)    
Predicted Functional Partners:
dsat_0748
KEGG: chy:CHY_2406 putative reductase, iron-sulfur cluster-binding subunit.
     0.994
dsat_0749
PFAM: Nitrate reductase gamma subunit; KEGG: dol:Dole_0303 hypothetical protein.
 
   0.927
dsat_2108
PFAM: Lactate utilization protein B/C, 4Fe-4S ferredoxin, iron-sulpur binding domain-containing protein, protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: das:Daes_1075 hypothetical protein; overlaps another CDS with the same product name.
 
 0.925
dsat_2101
TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein, 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein, Pyruvate/ketoisovalerate oxidoreductase, Pyruvate-flavodoxin oxidoreductase, EKR domain-containing protein, thiamine pyrophosphate TPP-binding domain-containing protein; KEGG: dvl:Dvul_0348 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein; SMART: Pyruvate-flavodoxin oxidoreductase, EKR domain-containing protein.
  
 
 0.854
dsat_0573
PFAM: methyl-viologen-reducing hydrogenase delta subunit; KEGG: dma:DMR_01930 methyl-viologen-reducing hydrogenase delta subunit family protein.
  
 0.825
dsat_0750
PFAM: Cytochrome c, class III, conserved region; KEGG: drt:Dret_1027 cytochrome c class III.
 
    0.801
dsat_2107
PFAM: Lactate utilization protein B/C; KEGG: dba:Dbac_1728 hypothetical protein; overlaps another CDS with the same product name.
 
 
 0.794
dsat_1159
PFAM: methyl-viologen-reducing hydrogenase delta subunit, Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain, 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; KEGG: dma:DMR_05420 quinone-interacting membrane-bound oxidoreductase complex subunit B.
 
  
 0.785
sucD
ATP-grasp domain protein; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit.
  
 
 0.749
dsat_0339
KEGG: dvm:DvMF_1553 sulfite reductase, dissimilatory-type subunit alpha; TIGRFAM: sulfite reductase, dissimilatory-type alpha subunit; PFAM: nitrite and sulfite reductase 4Fe-4S region.
 
 
 0.747
Your Current Organism:
Desulfovibrio alkalitolerans
NCBI taxonomy Id: 1121439
Other names: D. alkalitolerans DSM 16529, Desulfovibrio alkalitolerans DSM 16529
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