STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dsat_0779PFAM: YHS domain-containing protein, Ta0938-fold protein; KEGG: dba:Dbac_2312 YHS domain-containing protein. (114 aa)    
Predicted Functional Partners:
dsat_0778
PFAM: outer membrane efflux protein; KEGG: dsa:Desal_1790 outer membrane efflux protein.
       0.767
dsat_0777
KEGG: sfu:Sfum_3624 ATPase domain-containing protein; PFAM: ATP-binding region ATPase domain protein, Domain of unknown function DUF4118; SMART: ATP-binding region ATPase domain protein.
       0.737
ribBA
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.728
dsat_1002
PFAM: ferredoxin; KEGG: das:Daes_2300 iron-sulfur cluster-binding protein.
    
  0.587
dsat_0781
PFAM: acriflavin resistance protein; KEGG: dsa:Desal_1788 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
     
 0.571
dsat_0780
KEGG: dsa:Desal_1789 efflux transporter RND family, MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: Protein of unknown function DUF3347; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
    
  0.552
dsat_0776
Hypothetical protein; KEGG: osa:4341552 Os06g0622400.
       0.504
msrA
Peptide methionine sulfoxide reductase msrA; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
  
    0.411
Your Current Organism:
Desulfovibrio alkalitolerans
NCBI taxonomy Id: 1121439
Other names: D. alkalitolerans DSM 16529, Desulfovibrio alkalitolerans DSM 16529
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