STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dsat_0807PFAM: AMP-dependent synthetase and ligase; KEGG: dma:DMR_09030 putative phenylacetate-coenzyme A ligase. (421 aa)    
Predicted Functional Partners:
dsat_0806
KEGG: das:Daes_2847 ABC transporter-like protein; PFAM: ABC transporter related protein; SMART: AAA ATPase.
 
  0.841
dsat_0802
PFAM: AMP-dependent synthetase and ligase; KEGG: dma:DMR_09080 putative fatty-acid--CoA ligase.
 
    0.818
dsat_0805
KEGG: dma:DMR_09050 ABC transporter substrate binding protein precursor.
 
    0.792
dsat_0801
KEGG: dma:DMR_09090 putative ABC transporter ATP-binding protein; PFAM: ABC transporter related protein; SMART: AAA ATPase.
    0.743
dsat_0804
PFAM: ABC-type transporter, integral membrane subunit; KEGG: dma:DMR_09060 ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
    0.698
dsat_0803
PFAM: ABC-type transporter, integral membrane subunit; KEGG: dma:DMR_09070 ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
    0.596
dsat_1193
Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family.
   
 0.570
dsat_1897
PFAM: Aldehyde Dehydrogenase; KEGG: rce:RC1_3767 aldehyde dehydrogenase, putative; Belongs to the aldehyde dehydrogenase family.
   
 0.561
dsat_2833
Betaine aldehyde dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the reversible oxidation of betaine aldehyde to the corresponding acid.
   
 0.561
rplK
Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.
   
    0.420
Your Current Organism:
Desulfovibrio alkalitolerans
NCBI taxonomy Id: 1121439
Other names: D. alkalitolerans DSM 16529, Desulfovibrio alkalitolerans DSM 16529
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