STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dsat_0977PFAM: Tetratricopeptide TPR_2 repeat-containing protein; KEGG: das:Daes_2311 hypothetical protein. (297 aa)    
Predicted Functional Partners:
dsat_1117
KEGG: dsa:Desal_1157 TPR repeat-containing protein.
  
  
  0.800
dsat_1571
PFAM: glycosyl transferase family 9; KEGG: das:Daes_1538 glycosyl transferase family 9.
  
  
  0.791
dsat_2417
PFAM: glycosyl transferase group 1; KEGG: das:Daes_0225 hypothetical protein.
  
  
  0.778
dsat_2347
PFAM: Tetratricopeptide repeat-containing protein; KEGG: das:Daes_2153 tetratricopeptide domain-containing protein.
  
     0.774
dsat_0941
KEGG: dsa:Desal_2729 PBS lyase heat domain protein repeat-containing protein.
  
     0.769
dsat_2576
KEGG: dma:DMR_30860 hypothetical protein.
  
     0.769
dsat_1741
PFAM: Domain of unknown function DUF3880; KEGG: dvl:Dvul_1632 CgeB family protein.
  
     0.765
dsat_1817
KEGG: dma:DMR_25500 hypothetical protein; PFAM: response regulator receiver, Tetratricopeptide TPR_2 repeat-containing protein; SMART: Tetratricopeptide repeat-containing protein.
  
  
  0.765
dsat_0377
PFAM: Flagellar hook-length control protein-like protein; KEGG: dsa:Desal_3007 flagellar hook-length control protein.
  
     0.759
dsat_0100
PFAM: Tetratricopeptide TPR_2 repeat-containing protein; KEGG: dsa:Desal_3029 hypothetical protein.
  
     0.743
Your Current Organism:
Desulfovibrio alkalitolerans
NCBI taxonomy Id: 1121439
Other names: D. alkalitolerans DSM 16529, Desulfovibrio alkalitolerans DSM 16529
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.