STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dsat_1056PFAM: protein of unknown function DUF21, CBS domain containing protein; KEGG: dma:DMR_22520 hypothetical protein. (344 aa)    
Predicted Functional Partners:
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
  
 
 0.874
dsat_1055
CcmE/CycJ protein; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH.
 
     0.796
dsat_1053
KEGG: dvm:DvMF_3131 ABC transporter; PFAM: ABC transporter related protein; SMART: AAA ATPase.
 
    0.649
dsat_1049
KEGG: das:Daes_2463 tetratricopeptide domain-containing protein.
 
     0.644
dsat_1054
PFAM: cytochrome c assembly protein; KEGG: dsa:Desal_1540 cytochrome c assembly protein.
       0.610
dsat_1052
PFAM: cytochrome c-type biogenesis protein CcmB; KEGG: dma:DMR_22480 heme exporter protein B.
       0.597
dsat_1051
PFAM: cytochrome c assembly protein; KEGG: dsa:Desal_1543 cytochrome c assembly protein.
       0.592
guaB
IMP dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
  
 
 0.570
dsat_1050
Hypothetical protein.
       0.556
dsat_1057
PFAM: glycosyl transferase family 9; KEGG: dvl:Dvul_1939 glycosyl transferase; overlaps another CDS with the same product name.
       0.532
Your Current Organism:
Desulfovibrio alkalitolerans
NCBI taxonomy Id: 1121439
Other names: D. alkalitolerans DSM 16529, Desulfovibrio alkalitolerans DSM 16529
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.